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  5. Solyc05g053290.3.1

Solyc05g053290.3.1


Description : transcription factor (DBP)


Gene families : OG0000802 (Archaeplastida) Phylogenetic Tree(s): OG0000802_tree ,
OG_05_0109089 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0086918 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g053290.3.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00195190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.DBP... 0.02 Archaeplastida
AT3G62260 No alias Protein phosphatase 2C family protein 0.04 Archaeplastida
GSVIVT01017639001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.03 Archaeplastida
GSVIVT01028192001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.03 Archaeplastida
LOC_Os01g19130.1 No alias transcription factor (DBP) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 115 367
No external refs found!