Solyc05g053500.4.1

Description : transcription factor (GATA)

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000244 (SeedPlants) Phylogenetic Tree(s): OG_06_0000244_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g053500.4.1
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00242860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
AMTR_s00039p00112210	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
AMTR_s00056p00080350	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00106p00136770	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00148p00049970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT3G24050	GATA1	GATA transcription factor 1	0.06	Archaeplastida
AT3G54810	BME3-ZF, BME3, GATA8	Plant-specific GATA-type zinc finger transcription...	0.11	Archaeplastida
AT3G60530	GATA4	GATA transcription factor 4	0.04	Archaeplastida
AT4G34680	GATA3	GATA transcription factor 3	0.02	Archaeplastida
AT5G26930	GATA23	GATA transcription factor 23	0.03	Archaeplastida
AT5G66320	GATA5	GATA transcription factor 5	0.03	Archaeplastida
Cre01.g025050	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Cre06.g266950	No alias	No description available	0.02	Archaeplastida
GSVIVT01016265001	No alias	GATA transcription factor 8 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01017011001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01018180001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01018833001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
Gb_13387	No alias	transcription factor (GATA)	0.05	Archaeplastida
Gb_24250	No alias	transcription factor (GATA)	0.04	Archaeplastida
Gb_25568	No alias	transcription factor (GATA)	0.02	Archaeplastida
Gb_34837	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os02g12790.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
LOC_Os02g56250.1	No alias	transcription factor (GATA)	0.06	Archaeplastida
LOC_Os05g49280.1	No alias	transcription factor (GATA)	0.06	Archaeplastida
LOC_Os05g50270.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os06g37450.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
LOC_Os10g32070.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os12g07120.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os12g42970.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
MA_103421g0030	No alias	transcription factor (GATA)	0.07	Archaeplastida
MA_10434815g0010	No alias	transcription factor (GATA)	0.02	Archaeplastida
MA_92522g0010	No alias	transcription factor (GATA)	0.04	Archaeplastida
Mp1g03950.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Pp3c21_15110V3.1	No alias	GATA transcription factor 19	0.07	Archaeplastida
Solyc02g062760.4.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
Solyc03g033660.4.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Solyc05g056120.3.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
Zm00001e015260_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e016165_P001	No alias	transcription factor (GATA)	0.04	Archaeplastida
Zm00001e026601_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e032513_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e038971_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Neighborhood
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	181	214

External Links

No external refs found!

Solyc05g053500.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation