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  5. Solyc05g053680.1.1

Solyc05g053680.1.1


Description : pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0011469 (LandPlants) Phylogenetic Tree(s): OG_05_0011469_tree ,
OG_06_0002214 (SeedPlants) Phylogenetic Tree(s): OG_06_0002214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g053680.1.1
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00123p00050980 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT1G11370 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01018823001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Gb_01460 No alias pectin methylesterase 0.04 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os12g37660.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c19_8330V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo76951 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 44 329
No external refs found!