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  5. Solyc05g053770.4.1

Solyc05g053770.4.1


Description : no hits & (original description: none)


Gene families : OG0005186 (Archaeplastida) Phylogenetic Tree(s): OG0005186_tree ,
OG_05_0003555 (LandPlants) Phylogenetic Tree(s): OG_05_0003555_tree ,
OG_06_0003913 (SeedPlants) Phylogenetic Tree(s): OG_06_0003913_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g053770.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00256460 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
GSVIVT01021020001 No alias No description available 0.07 Archaeplastida
LOC_Os03g63040.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os08g41420.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp3g15600.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo437809 No alias No description available 0.04 Archaeplastida
Zm00001e006355_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!