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  5. Solyc05g054420.4.1

Solyc05g054420.4.1


Description : IDN/IDP regulatory protein of DNA methylation pathway


Gene families : OG0000867 (Archaeplastida) Phylogenetic Tree(s): OG0000867_tree ,
OG_05_0000555 (LandPlants) Phylogenetic Tree(s): OG_05_0000555_tree ,
OG_06_0000747 (SeedPlants) Phylogenetic Tree(s): OG_06_0000747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g054420.4.1
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
AT3G48670 RDM12, IDN2 XH/XS domain-containing protein 0.03 Archaeplastida
GSVIVT01016527001 No alias Factor of DNA methylation 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016528001 No alias Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
Gb_11593 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.02 Archaeplastida
MA_16249g0010 No alias Factor of DNA methylation 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_166638g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_9285293g0010 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.06 Archaeplastida
Pp3c21_20310V3.1 No alias XH/XS domain-containing protein 0.02 Archaeplastida
Pp3c21_20330V3.1 No alias XH/XS domain-containing protein 0.02 Archaeplastida
Pp3c21_20520V3.1 No alias XH/XS domain-containing protein 0.02 Archaeplastida
Solyc06g076210.3.1 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0031047 gene silencing by RNA IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005381 Znf-XS_domain 274 317
IPR005381 Znf-XS_domain 426 468
IPR005381 Znf-XS_domain 198 241
IPR005381 Znf-XS_domain 357 393
IPR005381 Znf-XS_domain 120 163
IPR005381 Znf-XS_domain 43 84
IPR005381 Znf-XS_domain 512 555
IPR005380 XS_domain 664 773
IPR005379 Uncharacterised_XH 1048 1105
No external refs found!