1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g054510.2.1

Solyc05g054510.2.1


Description : transcription factor (DOF)


Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0000055 (SeedPlants) Phylogenetic Tree(s): OG_06_0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g054510.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00232310 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AMTR_s00058p00210070 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
AMTR_s00119p00099150 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AT2G28810 No alias Dof-type zinc finger DNA-binding family protein 0.04 Archaeplastida
AT4G24060 No alias Dof-type zinc finger DNA-binding family protein 0.02 Archaeplastida
Gb_12877 No alias transcription factor (DOF) 0.02 Archaeplastida
Gb_35447 No alias transcription factor (DOF) 0.02 Archaeplastida
LOC_Os01g15900.1 No alias transcription factor (DOF) 0.02 Archaeplastida
LOC_Os03g07360.1 No alias transcription factor (DOF) 0.03 Archaeplastida
LOC_Os03g16850.1 No alias transcription factor (DOF) 0.03 Archaeplastida
LOC_Os03g60630.1 No alias transcription factor (DOF) 0.03 Archaeplastida
LOC_Os04g47990.1 No alias transcription factor (DOF) 0.02 Archaeplastida
LOC_Os05g02150.1 No alias transcription factor (DOF) 0.03 Archaeplastida
LOC_Os07g13260.1 No alias transcription factor (DOF) 0.03 Archaeplastida
MA_459791g0010 No alias transcription factor (DOF) 0.02 Archaeplastida
Pp3c12_22390V3.1 No alias cycling DOF factor 3 0.01 Archaeplastida
Pp3c15_3180V3.1 No alias cycling DOF factor 3 0.04 Archaeplastida
Pp3c9_4910V3.1 No alias cycling DOF factor 2 0.02 Archaeplastida
Solyc02g076850.2.1 No alias transcription factor (DOF) 0.05 Archaeplastida
Solyc06g076030.3.1 No alias transcription factor (DOF) 0.03 Archaeplastida
Solyc06g150130.1.1 No alias transcription factor (DOF) 0.05 Archaeplastida
Zm00001e000526_P001 No alias transcription factor (DOF) 0.03 Archaeplastida
Zm00001e001988_P001 No alias transcription factor (DOF) 0.03 Archaeplastida
Zm00001e003086_P001 No alias transcription factor (DOF) 0.09 Archaeplastida
Zm00001e005785_P001 No alias transcription factor (DOF) 0.02 Archaeplastida
Zm00001e006190_P001 No alias transcription factor (DOF) 0.03 Archaeplastida
Zm00001e006527_P001 No alias transcription factor (DOF) 0.06 Archaeplastida
Zm00001e023218_P004 No alias transcription factor (DOF) 0.02 Archaeplastida
Zm00001e035892_P001 No alias transcription factor (DOF) 0.04 Archaeplastida
Zm00001e038479_P002 No alias transcription factor (DOF) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003851 Znf_Dof 81 136
No external refs found!