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  5. Solyc05g055500.1.1

Solyc05g055500.1.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000103 (Archaeplastida) Phylogenetic Tree(s): OG0000103_tree ,
OG_05_0000039 (LandPlants) Phylogenetic Tree(s): OG_05_0000039_tree ,
OG_06_0000107 (SeedPlants) Phylogenetic Tree(s): OG_06_0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g055500.1.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00120810 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.1 Archaeplastida
AMTR_s00110p00085760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AT1G02040 No alias C2H2-type zinc finger family protein 0.04 Archaeplastida
AT2G45120 No alias C2H2-like zinc finger protein 0.05 Archaeplastida
AT3G10470 No alias C2H2-type zinc finger family protein 0.05 Archaeplastida
AT3G19580 AZF2, ZF2 zinc-finger protein 2 0.04 Archaeplastida
AT5G04390 No alias C2H2-type zinc finger family protein 0.05 Archaeplastida
GSVIVT01023887001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.15 Archaeplastida
GSVIVT01031461001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_23552 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os02g44120.1 No alias C2H2 zinc finger transcription factor 0.09 Archaeplastida
LOC_Os03g55540.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os04g46670.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
MA_10426405g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Pp3c18_22010V3.1 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
Solyc01g090830.2.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e002022_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e007312_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e038072_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e041518_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015693 magnesium ion transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!