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  5. Solyc05g055510.3.1

Solyc05g055510.3.1


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g055510.3.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AT5G48900 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Gb_12278 No alias pectate lyase 0.04 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.03 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.03 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.03 Archaeplastida
MA_476625g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_91467g0010 No alias pectate lyase 0.03 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.03 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901642 nucleoside transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 153 337
No external refs found!