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  5. Solyc05g056300.4.1

Solyc05g056300.4.1


Description : F-type thioredoxin


Gene families : OG0004955 (Archaeplastida) Phylogenetic Tree(s): OG0004955_tree ,
OG_05_0004957 (LandPlants) Phylogenetic Tree(s): OG_05_0004957_tree ,
OG_06_0006581 (SeedPlants) Phylogenetic Tree(s): OG_06_0006581_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g056300.4.1
Cluster HCCA: Cluster_271

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00119540 evm_27.TU.AmTr_v1... Redox homeostasis.chloroplast redox homeostasis.F-type... 0.05 Archaeplastida
AT3G02730 ATF1, TRXF1 thioredoxin F-type 1 0.04 Archaeplastida
AT5G16400 TRXF2, ATF2 thioredoxin F2 0.07 Archaeplastida
Cre05.g243050 No alias Redox homeostasis.chloroplast redox homeostasis.F-type... 0.05 Archaeplastida
GSVIVT01019070001 No alias Redox homeostasis.chloroplast redox homeostasis.F-type... 0.06 Archaeplastida
LOC_Os01g68480.1 No alias F-type thioredoxin 0.08 Archaeplastida
Smo110708 No alias Redox homeostasis.chloroplast redox homeostasis.F-type... 0.05 Archaeplastida
Zm00001e027512_P002 No alias F-type thioredoxin 0.06 Archaeplastida
Zm00001e040421_P002 No alias F-type thioredoxin 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006096 glycolytic process IEP Neighborhood
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006757 ATP generation from ADP IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008883 glutamyl-tRNA reductase activity IEP Neighborhood
BP GO:0009132 nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009166 nucleotide catabolic process IEP Neighborhood
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0016851 magnesium chelatase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042866 pyruvate biosynthetic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0046031 ADP metabolic process IEP Neighborhood
BP GO:0046939 nucleotide phosphorylation IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Neighborhood
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 78 176
No external refs found!