Solyc06g005110.3.1

Description : 40S ribosomal protein S23 OS=Fragaria ananassa (sp|p46297|rs23_fraan : 105.0)

Gene families : OG0001653 (Archaeplastida) Phylogenetic Tree(s): OG0001653_tree ,
OG_05_0109125 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0086958 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g005110.3.1
Cluster	HCCA: Cluster_237

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001264.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Cre12.g504200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
GSVIVT01016341001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
Gb_02361	No alias	component RPS23 of SSU proteome	0.03	Archaeplastida
Gb_36570	No alias	component RPS23 of SSU proteome	0.04	Archaeplastida
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.03	Archaeplastida
Pp3c11_11070V3.1	No alias	Ribosomal protein S12/S23 family protein	0.05	Archaeplastida
Pp3c12_25120V3.1	No alias	Ribosomal protein S12/S23 family protein	0.06	Archaeplastida
Pp3c2_24130V3.1	No alias	Ribosomal protein S12/S23 family protein	0.04	Archaeplastida
Pp3c4_3120V3.1	No alias	Ribosomal protein S12/S23 family protein	0.05	Archaeplastida
Pp3c7_14200V3.1	No alias	Ribosomal protein S12/S23 family protein	0.03	Archaeplastida
Smo145246	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	Archaeplastida
Zm00001e006170_P001	No alias	component RPS23 of SSU proteome	0.03	Archaeplastida
Zm00001e019377_P001	No alias	component RPS23 of SSU proteome	0.05	Archaeplastida
Zm00001e027265_P001	No alias	component RPS23 of SSU proteome	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
CC	GO:0000930	gamma-tubulin complex	IEP	Neighborhood
CC	GO:0000931	gamma-tubulin large complex	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
CC	GO:0008274	gamma-tubulin ring complex	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030515	snoRNA binding	IEP	Neighborhood
BP	GO:0031503	protein-containing complex localization	IEP	Neighborhood
BP	GO:0033566	gamma-tubulin complex localization	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0034629	cellular protein-containing complex localization	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044450	microtubule organizing center part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	33	65

External Links

No external refs found!

Solyc06g005110.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation