1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g005360.3.1

Solyc06g005360.3.1


Description : actin-depolymerizing factor


Gene families : OG0000480 (Archaeplastida) Phylogenetic Tree(s): OG0000480_tree ,
OG_05_0000447 (LandPlants) Phylogenetic Tree(s): OG_05_0000447_tree ,
OG_06_0086960 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g005360.3.1
Cluster HCCA: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00089320 evm_27.TU.AmTr_v1... Cytoskeleton.microfilament network.actin... 0.04 Archaeplastida
AT3G46000 ADF2 actin depolymerizing factor 2 0.04 Archaeplastida
AT4G25590 ADF7 actin depolymerizing factor 7 0.03 Archaeplastida
AT5G59880 ADF3 actin depolymerizing factor 3 0.05 Archaeplastida
GSVIVT01016593001 No alias Cytoskeleton.microfilament network.actin... 0.1 Archaeplastida
GSVIVT01025525001 No alias Cytoskeleton.microfilament network.actin... 0.07 Archaeplastida
GSVIVT01027807001 No alias Cytoskeleton.microfilament network.actin... 0.06 Archaeplastida
Gb_02796 No alias actin-depolymerizing factor 0.03 Archaeplastida
Gb_20929 No alias actin-depolymerizing factor 0.05 Archaeplastida
Gb_36582 No alias actin-depolymerizing factor 0.04 Archaeplastida
Gb_41490 No alias actin-depolymerizing factor 0.02 Archaeplastida
LOC_Os03g13950.1 No alias actin-depolymerizing factor 0.02 Archaeplastida
LOC_Os03g56790.1 No alias actin-depolymerizing factor 0.02 Archaeplastida
MA_10433573g0010 No alias actin-depolymerizing factor 0.03 Archaeplastida
MA_112179g0010 No alias actin-depolymerizing factor 0.02 Archaeplastida
Mp1g17660.1 No alias actin-depolymerizing factor 0.02 Archaeplastida
Mp2g12970.1 No alias actin-depolymerizing factor 0.11 Archaeplastida
Mp3g20570.1 No alias actin-depolymerizing factor 0.07 Archaeplastida
Zm00001e006186_P001 No alias actin-depolymerizing factor 0.05 Archaeplastida
Zm00001e011754_P001 No alias actin-depolymerizing factor 0.1 Archaeplastida
Zm00001e015357_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e023183_P001 No alias actin-depolymerizing factor 0.04 Archaeplastida
Zm00001e034985_P001 No alias actin-depolymerizing factor 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005750 mitochondrial respiratory chain complex III IEP Neighborhood
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Neighborhood
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033176 proton-transporting V-type ATPase complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045275 respiratory chain complex III IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098803 respiratory chain complex IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002108 ADF-H 14 134
No external refs found!