AMTR_s00025p00245560 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.389

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor

Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0001935 (LandPlants) Phylogenetic Tree(s): OG_05_0001935_tree ,
OG_06_0002288 (SeedPlants) Phylogenetic Tree(s): OG_06_0002288_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00245560
Cluster	HCCA: Cluster_263

Target	Alias	Description	ECC score	Gene Family Method
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.01	Archaeplastida
AT2G46020	CHA2, CHR2, BRM, ATBRM	transcription regulatory protein SNF2, putative	0.01	Archaeplastida
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.01	Archaeplastida
Gb_16961	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.01	Archaeplastida
MA_10436824g0010	No alias	No annotation	0.01	Archaeplastida
MA_8926002g0010	No alias	Chromatin structure-remodeling complex protein SYD...	0.01	Archaeplastida
Mp1g05480.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.01	Archaeplastida
Mp2g26680.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Mp4g00040.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Solyc11g062010.3.1	No alias	chromatin remodeling factor (Snf2)	0.01	Archaeplastida
Zm00001e030969_P003	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	739	818
IPR000330	SNF2_N	399	687

External Links

No external refs found!