Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.389
Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor
Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0001935 (LandPlants) Phylogenetic Tree(s): OG_05_0001935_tree ,
OG_06_0002288 (SeedPlants) Phylogenetic Tree(s): OG_06_0002288_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00025p00245560 | |
Cluster | HCCA: Cluster_263 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G28290 | SYD, CHR3 | P-loop containing nucleoside triphosphate hydrolases... | 0.01 | Archaeplastida | |
AT2G46020 | CHA2, CHR2, BRM, ATBRM | transcription regulatory protein SNF2, putative | 0.01 | Archaeplastida | |
AT5G44800 | PKR1, CHR4 | chromatin remodeling 4 | 0.01 | Archaeplastida | |
Gb_16961 | No alias | chromatin remodeling factor (Chd3/Mi-2) | 0.01 | Archaeplastida | |
MA_10436824g0010 | No alias | No annotation | 0.01 | Archaeplastida | |
MA_8926002g0010 | No alias | Chromatin structure-remodeling complex protein SYD... | 0.01 | Archaeplastida | |
Mp1g05480.1 | No alias | chromatin remodeling factor (Chd1). component CHR5 of... | 0.01 | Archaeplastida | |
Mp2g26680.1 | No alias | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | Archaeplastida | |
Mp4g00040.1 | No alias | chromatin remodeling factor (Chd3/Mi-2) | 0.02 | Archaeplastida | |
Solyc11g062010.3.1 | No alias | chromatin remodeling factor (Snf2) | 0.01 | Archaeplastida | |
Zm00001e030969_P003 | No alias | chromatin remodeling factor (Snf2) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Neighborhood |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Neighborhood |
No external refs found! |