AMTR_s00025p00245990 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.391

Description : (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana

Gene families : OG0000176 (Archaeplastida) Phylogenetic Tree(s): OG0000176_tree ,
OG_05_0010927 (LandPlants) Phylogenetic Tree(s): OG_05_0010927_tree ,
OG_06_0007616 (SeedPlants) Phylogenetic Tree(s): OG_06_0007616_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00245990
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
MA_10307468g0010	No alias	(R)-mandelonitrile lyase-like OS=Arabidopsis thaliana...	0.02	Archaeplastida
Pp3c9_16990V3.1	No alias	Glucose-methanol-choline (GMC) oxidoreductase family protein	0.02	Archaeplastida
Pp3c9_17010V3.1	No alias	Glucose-methanol-choline (GMC) oxidoreductase family protein	0.01	Archaeplastida
Smo235799	No alias	(R)-mandelonitrile lyase-like OS=Arabidopsis thaliana	0.02	Archaeplastida
Smo429523	No alias	Protein HOTHEAD OS=Arabidopsis thaliana	0.02	Archaeplastida
Zm00001e002156_P001	No alias	Protein HOTHEAD OS=Arabidopsis thaliana...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	IEA	Interproscan
MF	GO:0050662	coenzyme binding	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
BP	GO:0006304	DNA modification	IEP	Neighborhood
BP	GO:0006305	DNA alkylation	IEP	Neighborhood
BP	GO:0006306	DNA methylation	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0044728	DNA methylation or demethylation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000172	GMC_OxRdtase_N	183	310
IPR000172	GMC_OxRdtase_N	30	125
IPR007867	GMC_OxRtase_C	378	521

External Links

No external refs found!