Solyc06g009280.1.1

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000418 (LandPlants) Phylogenetic Tree(s): OG_05_0000418_tree ,
OG_06_0000295 (SeedPlants) Phylogenetic Tree(s): OG_06_0000295_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g009280.1.1
Cluster	HCCA: Cluster_213

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00263610	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.06	Archaeplastida
AMTR_s00010p00254310	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00018p00193820	evm_27.TU.AmTr_v1...	ABC transporter B family member 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00045p00108620	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00045p00109940	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00055p00102180	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00076p00195870	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AT1G27940	PGP13	P-glycoprotein 13	0.05	Archaeplastida
AT1G28010	ABCB14, ATABCB14, PGP14	P-glycoprotein 14	0.04	Archaeplastida
AT3G28345	No alias	ABC transporter family protein	0.05	Archaeplastida
AT3G28360	PGP16	P-glycoprotein 16	0.05	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.05	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.04	Archaeplastida
AT4G01830	PGP5	P-glycoprotein 5	0.16	Archaeplastida
AT4G18050	PGP9	P-glycoprotein 9	0.03	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.07	Archaeplastida
AT5G46540	PGP7	P-glycoprotein 7	0.05	Archaeplastida
GSVIVT01013125001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
GSVIVT01015306001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01021365001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
GSVIVT01028256001	No alias	Solute transport.primary active transport.ABC...	0.05	Archaeplastida
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Gb_02468	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Gb_02469	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_07563	No alias	subfamily ABCB transporter	0.08	Archaeplastida
Gb_08616	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_08706	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_10211	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_10216	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_27347	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.08	Archaeplastida
Gb_33057	No alias	subfamily ABCB transporter	0.09	Archaeplastida
Gb_33058	No alias	subfamily ABCB transporter	0.08	Archaeplastida
Gb_36497	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os01g18670.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
LOC_Os01g50080.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os01g50160.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os02g21750.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os02g46680.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os05g47500.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os08g45030.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
MA_10432922g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_10436810g0020	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_107576g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_111099g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_126766g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_18863g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_6870g0010	No alias	subfamily ABCB transporter	0.05	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Mp2g02910.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	Archaeplastida
Mp2g06270.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Mp2g11920.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Mp3g11830.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.04	Archaeplastida
Pp3c17_16450V3.1	No alias	ATP binding cassette subfamily B19	0.03	Archaeplastida
Pp3c1_31680V3.1	No alias	ABC transporter family protein	0.02	Archaeplastida
Pp3c1_34680V3.1	No alias	P-glycoprotein 10	0.08	Archaeplastida
Pp3c1_7210V3.1	No alias	ATP binding cassette subfamily B19	0.03	Archaeplastida
Pp3c1_7215V3.1	No alias	ATP binding cassette subfamily B19	0.03	Archaeplastida
Pp3c6_7260V3.1	No alias	ATP binding cassette subfamily B19	0.03	Archaeplastida
Pp3c9_13390V3.1	No alias	P-glycoprotein 6	0.03	Archaeplastida
Smo123915	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Smo148837	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Smo169182	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Smo230134	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo230688	No alias	Solute transport.primary active transport.ABC...	0.06	Archaeplastida
Smo408755	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Smo410515	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Smo92485	No alias	Solute transport.primary active transport.ABC...	0.06	Archaeplastida
Smo99885	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Solyc03g005860.4.1	No alias	subfamily ABCB transporter	0.08	Archaeplastida
Solyc03g093650.3.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Solyc12g098840.3.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Solyc12g098870.3.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e014797_P002	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e020073_P001	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Zm00001e025063_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	1064	1214
IPR011527	ABC1_TM_dom	724	993
IPR011527	ABC1_TM_dom	61	334
IPR003439	ABC_transporter-like	405	551

External Links

No external refs found!

Solyc06g009280.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation