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  5. Solyc06g010240.3.1

Solyc06g010240.3.1


Description : Helicase protein MOM1 OS=Arabidopsis thaliana (sp|q9m658|mom1_arath : 356.0)


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0003418 (LandPlants) Phylogenetic Tree(s): OG_05_0003418_tree ,
OG_06_0003791 (SeedPlants) Phylogenetic Tree(s): OG_06_0003791_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g010240.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.13 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.12 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.14 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.08 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.17 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.16 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.08 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.03 Archaeplastida
AT5G18620 CHR17 chromatin remodeling factor17 0.03 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.13 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00021623.13 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.06 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre12.g508150 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.13 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.09 Archaeplastida
GSVIVT01017821001 No alias No description available 0.11 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.09 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.15 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.09 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.05 Archaeplastida
Gb_15026 No alias chromatin remodeling factor (Alc) 0.03 Archaeplastida
Gb_16310 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.1 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.09 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os02g02290.1 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.09 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
LOC_Os06g14406.1 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.09 Archaeplastida
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.05 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
MA_10436824g0010 No alias No annotation 0.1 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.07 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.12 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.1 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.09 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.06 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.06 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.08 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.1 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.11 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.09 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.06 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.04 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.09 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.07 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Smo164481 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.06 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.11 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.12 Archaeplastida
Zm00001e039130_P001 No alias Probable plastid-lipid-associated protein 8,... 0.01 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019902 phosphatase binding IEP Neighborhood
MF GO:0019903 protein phosphatase binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 805 936
IPR001650 Helicase_C 1056 1167
IPR019787 Znf_PHD-finger 535 581
IPR023780 Chromo_domain 595 651
No external refs found!