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  5. Solyc06g035450.4.1

Solyc06g035450.4.1


Description : DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea (sp|q41382|rh7_spiol : 444.0)


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0003428 (LandPlants) Phylogenetic Tree(s): OG_05_0003428_tree ,
OG_06_0003705 (SeedPlants) Phylogenetic Tree(s): OG_06_0003705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g035450.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.05 Archaeplastida
Cpa|evm.model.tig00020734.25 No alias DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.01 Archaeplastida
Cre02.g118300 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida
Gb_39948 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os09g34910.1 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.06 Archaeplastida
MA_17924g0010 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida
Pp3c20_20710V3.1 No alias DEAD box RNA helicase (PRH75) 0.07 Archaeplastida
Smo10677 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Zm00001e018107_P001 No alias RNA helicase (PMH) 0.02 Archaeplastida
Zm00001e034728_P002 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 134 310
No external refs found!