1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g048943.1.1

Solyc06g048943.1.1


Description : Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana (sp|q9zt94|polr2_arath : 171.0)


Gene families : OG0000940 (Archaeplastida) Phylogenetic Tree(s): OG0000940_tree ,
OG_05_0000578 (LandPlants) Phylogenetic Tree(s): OG_05_0000578_tree ,
OG_06_0000281 (SeedPlants) Phylogenetic Tree(s): OG_06_0000281_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g048943.1.1
Cluster HCCA: Cluster_564

Target Alias Description ECC score Gene Family Method Actions
Solyc02g005335.1.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Solyc02g077865.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g034394.1.1 No alias No annotation 0.05 Archaeplastida
Solyc03g082845.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc04g053033.1.1 No alias No annotation 0.03 Archaeplastida
Solyc04g074865.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g006325.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc05g051385.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc07g051883.1.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc07g061895.1.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Solyc09g042725.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.08 Archaeplastida
Solyc10g051255.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.09 Archaeplastida
Solyc12g039205.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 Archaeplastida
Solyc12g042215.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Solyc12g062203.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 4 95
No external refs found!