1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g048960.4.1

Solyc06g048960.4.1


Description : no hits & (original description: none)


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0000940 (LandPlants) Phylogenetic Tree(s): OG_05_0000940_tree ,
OG_06_0002089 (SeedPlants) Phylogenetic Tree(s): OG_06_0002089_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g048960.4.1
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00252700 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.RTL2 ribonuclease-III... 0.03 Archaeplastida
AMTR_s00026p00051870 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.04 Archaeplastida
AMTR_s00033p00127000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 Archaeplastida
Cre02.g141000 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01019052001 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.04 Archaeplastida
GSVIVT01027460001 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Gb_34257 No alias Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os03g02970.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.07 Archaeplastida
LOC_Os10g34430.1 No alias endoribonuclease (DCL3) 0.02 Archaeplastida
MA_10431876g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_10436812g0020 No alias Dicer-like protein 4 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10437243g0010 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.03 Archaeplastida
MA_108060g0010 No alias Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.06 Archaeplastida
MA_118446g0010 No alias Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.02 Archaeplastida
MA_8664686g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_9225368g0010 No alias No annotation 0.14 Archaeplastida
Pp3c1_24950V3.1 No alias dicer-like 1 0.03 Archaeplastida
Smo448444 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 Archaeplastida
Solyc08g067210.3.1 No alias endoribonuclease (DCL3) 0.03 Archaeplastida
Zm00001e012492_P003 No alias Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp.... 0.03 Archaeplastida
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!