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  5. Solyc06g050550.4.1

Solyc06g050550.4.1


Description : component SNX2 of Retromer protein recycling complex


Gene families : OG0002219 (Archaeplastida) Phylogenetic Tree(s): OG0002219_tree ,
OG_05_0002609 (LandPlants) Phylogenetic Tree(s): OG_05_0002609_tree ,
OG_06_0002925 (SeedPlants) Phylogenetic Tree(s): OG_06_0002925_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g050550.4.1
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00059770 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.protein... 0.06 Archaeplastida
Zm00001e031504_P001 No alias component SNX2 of Retromer protein recycling complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
InterPro domains Description Start Stop
IPR001683 Phox 2 39
IPR015404 Vps5_C 109 341
No external refs found!