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  5. Solyc06g051810.4.1

Solyc06g051810.4.1


Description : IDN/IDP regulatory protein of DNA methylation pathway


Gene families : OG0000867 (Archaeplastida) Phylogenetic Tree(s): OG0000867_tree ,
OG_05_0000555 (LandPlants) Phylogenetic Tree(s): OG_05_0000555_tree ,
OG_06_0000747 (SeedPlants) Phylogenetic Tree(s): OG_06_0000747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g051810.4.1
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00226630 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
AMTR_s00012p00228300 evm_27.TU.AmTr_v1... Factor of DNA methylation 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G80790 No alias XH/XS domain-containing protein 0.04 Archaeplastida
AT3G12550 No alias XH/XS domain-containing protein 0.04 Archaeplastida
AT3G48670 RDM12, IDN2 XH/XS domain-containing protein 0.04 Archaeplastida
GSVIVT01010889001 No alias Chromatin organisation.DNA methylation.canonical... 0.07 Archaeplastida
GSVIVT01016528001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
LOC_Os01g05470.1 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.08 Archaeplastida
LOC_Os01g44230.1 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.06 Archaeplastida
Zm00001e016919_P001 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.1 Archaeplastida
Zm00001e020386_P003 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.11 Archaeplastida
Zm00001e025803_P001 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.09 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0031047 gene silencing by RNA IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0019905 syntaxin binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005381 Znf-XS_domain 43 86
IPR005379 Uncharacterised_XH 507 634
IPR005380 XS_domain 119 229
No external refs found!