1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g051920.4.1

Solyc06g051920.4.1


Description : cyclic nucleotide-gated cation channel (CNGC)


Gene families : OG0000137 (Archaeplastida) Phylogenetic Tree(s): OG0000137_tree ,
OG_05_0000296 (LandPlants) Phylogenetic Tree(s): OG_05_0000296_tree ,
OG_06_0000523 (SeedPlants) Phylogenetic Tree(s): OG_06_0000523_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g051920.4.1
Cluster HCCA: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00155680 evm_27.TU.AmTr_v1... Solute transport.channels.VIC superfamily.cyclic... 0.03 Archaeplastida
AT1G19780 ATCNGC8, CNGC8 cyclic nucleotide gated channel 8 0.05 Archaeplastida
AT3G48010 ATCNGC16, CNGC16 cyclic nucleotide-gated channel 16 0.05 Archaeplastida
AT4G30360 ATCNGC17, CNGC17 cyclic nucleotide-gated channel 17 0.06 Archaeplastida
AT5G14870 CNGC18, ATCNGC18 cyclic nucleotide-gated channel 18 0.06 Archaeplastida
Cpa|evm.model.tig00021244.33 No alias Putative cyclic nucleotide-gated ion channel 9... 0.02 Archaeplastida
GSVIVT01015970001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.05 Archaeplastida
GSVIVT01028711001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.04 Archaeplastida
GSVIVT01029404001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.03 Archaeplastida
GSVIVT01033170001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.03 Archaeplastida
Gb_10882 No alias Probable cyclic nucleotide-gated ion channel 20,... 0.02 Archaeplastida
LOC_Os02g15580.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.04 Archaeplastida
LOC_Os02g54760.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
LOC_Os06g08850.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
LOC_Os12g06570.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.04 Archaeplastida
LOC_Os12g28260.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
MA_10428782g0010 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
Pp3c15_11518V3.1 No alias Cyclic nucleotide-regulated ion channel family protein 0.02 Archaeplastida
Smo113786 No alias Solute transport.channels.VIC superfamily.cyclic... 0.03 Archaeplastida
Smo266514 No alias Solute transport.channels.VIC superfamily.cyclic... 0.02 Archaeplastida
Solyc02g086990.4.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.05 Archaeplastida
Zm00001e005735_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e006772_P003 No alias cyclic nucleotide-gated cation channel (CNGC) 0.04 Archaeplastida
Zm00001e011591_P002 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
Zm00001e032059_P001 No alias cyclic nucleotide-gated cation channel (CNGC) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
BP GO:0015693 magnesium ion transport IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 89 404
No external refs found!