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Description : NSR RNA splicing regulator
Gene families : OG0001050 (Archaeplastida) Phylogenetic Tree(s): OG0001050_tree ,
OG_05_0000850 (LandPlants) Phylogenetic Tree(s): OG_05_0000850_tree ,
OG_06_0000973 (SeedPlants) Phylogenetic Tree(s): OG_06_0000973_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc06g052080.4.1 | |
| Cluster | HCCA: Cluster_217 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00041p00116460 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome-associated... | 0.08 | Archaeplastida | |
| Gb_18526 | No alias | NSR RNA splicing regulator | 0.09 | Archaeplastida | |
| LOC_Os06g03690.2 | No alias | NSR RNA splicing regulator | 0.03 | Archaeplastida | |
| LOC_Os09g35850.1 | No alias | NSR RNA splicing regulator | 0.03 | Archaeplastida | |
| Pp3c5_2080V3.1 | No alias | nucleotide binding;nucleic acid binding | 0.02 | Archaeplastida | |
| Pp3c6_29580V3.1 | No alias | nucleotide binding;nucleic acid binding | 0.03 | Archaeplastida | |
| Zm00001e024672_P001 | No alias | NSR RNA splicing regulator | 0.08 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Neighborhood |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Neighborhood |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003684 | damaged DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0004371 | glycerone kinase activity | IEP | Neighborhood |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Neighborhood |
| BP | GO:0006066 | alcohol metabolic process | IEP | Neighborhood |
| BP | GO:0006071 | glycerol metabolic process | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| BP | GO:0010498 | proteasomal protein catabolic process | IEP | Neighborhood |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Neighborhood |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
| CC | GO:0017053 | transcriptional repressor complex | IEP | Neighborhood |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Neighborhood |
| BP | GO:0019400 | alditol metabolic process | IEP | Neighborhood |
| BP | GO:0019751 | polyol metabolic process | IEP | Neighborhood |
| BP | GO:0030163 | protein catabolic process | IEP | Neighborhood |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Neighborhood |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Neighborhood |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 141 | 204 |
| No external refs found! |