Solyc06g054400.3.1


Description : Met-tRNA positioning component eIF5B of initiator tRNA carrier complex


Gene families : OG0002771 (Archaeplastida) Phylogenetic Tree(s): OG0002771_tree ,
OG_05_0002757 (LandPlants) Phylogenetic Tree(s): OG_05_0002757_tree ,
OG_06_0002708 (SeedPlants) Phylogenetic Tree(s): OG_06_0002708_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g054400.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT1G21160 No alias eukaryotic translation initiation factor 2 (eIF-2) family protein 0.04 Archaeplastida
GSVIVT01034895001 No alias Protein biosynthesis.translation initiation.eIF5B... 0.04 Archaeplastida
Gb_28583 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.02 Archaeplastida
LOC_Os05g51500.1 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.09 Archaeplastida
Pp3c4_28500V3.1 No alias eukaryotic translation initiation factor 2 (eIF-2) family protein 0.03 Archaeplastida
Zm00001e026670_P001 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000795 TF_GTP-bd_dom 554 763
IPR004161 EFTu-like_2 788 866
IPR023115 TIF_IF2_dom3 889 990
No external refs found!