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  5. Solyc06g059760.3.1

Solyc06g059760.3.1


Description : Transcriptional corepressor SEUSS OS=Arabidopsis thaliana (sp|q8w234|seuss_arath : 562.0)


Gene families : OG0001132 (Archaeplastida) Phylogenetic Tree(s): OG0001132_tree ,
OG_05_0001403 (LandPlants) Phylogenetic Tree(s): OG_05_0001403_tree ,
OG_06_0001294 (SeedPlants) Phylogenetic Tree(s): OG_06_0001294_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g059760.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00119460 evm_27.TU.AmTr_v1... Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G43850 SEU SEUSS transcriptional co-regulator 0.05 Archaeplastida
AT4G25515 SLK3 SEUSS-like 3 0.04 Archaeplastida
GSVIVT01010013001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01010616001 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_04218 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.1 Archaeplastida
Gb_04695 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.12 Archaeplastida
Gb_27183 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.1 Archaeplastida
LOC_Os06g03600.1 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os11g10060.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.12 Archaeplastida
LOC_Os11g10070.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.08 Archaeplastida
MA_12796g0010 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.05 Archaeplastida
MA_13825g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_208023g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_33392g0010 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.03 Archaeplastida
Mp8g17020.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
Pp3c16_15040V3.1 No alias SEUSS transcriptional co-regulator 0.04 Archaeplastida
Pp3c16_1979V3.1 No alias No annotation 0.03 Archaeplastida
Pp3c25_7810V3.1 No alias SEUSS transcriptional co-regulator 0.04 Archaeplastida
Pp3c6_27010V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Zm00001e011073_P001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e021381_P001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e029868_P001 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.09 Archaeplastida
Zm00001e039584_P001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR029005 LIM-bd/SEUSS 319 574
No external refs found!