1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g062360.3.1

Solyc06g062360.3.1


Description : SYP2-group Qa-type SNARE component


Gene families : OG0001376 (Archaeplastida) Phylogenetic Tree(s): OG0001376_tree ,
OG_05_0001071 (LandPlants) Phylogenetic Tree(s): OG_05_0001071_tree ,
OG_06_0001041 (SeedPlants) Phylogenetic Tree(s): OG_06_0001041_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g062360.3.1
Cluster HCCA: Cluster_553

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00084940 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.05 Archaeplastida
AT4G17730 ATSYP23, SYP23 syntaxin of plants 23 0.02 Archaeplastida
GSVIVT01013100001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
LOC_Os02g47440.1 No alias SYP2-group Qa-type SNARE component 0.03 Archaeplastida
Pp3c1_6470V3.1 No alias Syntaxin/t-SNARE family protein 0.01 Archaeplastida
Smo121392 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
Smo142582 No alias Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 30 129
IPR000727 T_SNARE_dom 216 268
No external refs found!