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  5. Solyc06g062800.4.1

Solyc06g062800.4.1


Description : mRNA unwinding factor (eIF4A)


Gene families : OG0000822 (Archaeplastida) Phylogenetic Tree(s): OG0000822_tree ,
OG_05_0001711 (LandPlants) Phylogenetic Tree(s): OG_05_0001711_tree ,
OG_06_0001736 (SeedPlants) Phylogenetic Tree(s): OG_06_0001736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g062800.4.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00181640 evm_27.TU.AmTr_v1... Protein biosynthesis.translation initiation.mRNA... 0.02 Archaeplastida
Cre03.g199647 No alias RNA processing.RNA quality control Exon Junction complex... 0.01 Archaeplastida
GSVIVT01015173001 No alias Protein biosynthesis.translation initiation.mRNA... 0.03 Archaeplastida
Gb_05983 No alias mRNA unwinding factor (eIF4A) 0.02 Archaeplastida
MA_50378g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c11_22980V3.1 No alias eukaryotic translation initiation factor 4A1 0.02 Archaeplastida
Pp3c5_28210V3.1 No alias eukaryotic translation initiation factor 4A1 0.02 Archaeplastida
Pp3c7_3770V3.1 No alias eukaryotic translation initiation factor 4A1 0.02 Archaeplastida
Pp3s93_30V3.1 No alias eukaryotic translation initiation factor 4A1 0.04 Archaeplastida
Zm00001e023523_P001 No alias helicase component eIF4A3 of RNA quality control Exon... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 266 374
IPR011545 DEAD/DEAH_box_helicase_dom 65 226
No external refs found!