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  5. Solyc06g063110.3.1

Solyc06g063110.3.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0000056 (SeedPlants) Phylogenetic Tree(s): OG_06_0000056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g063110.3.1
Cluster HCCA: Cluster_570

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00004p00172400 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.2 Archaeplastida
AT1G49210 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.03 Archaeplastida
AT2G35910 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G43430 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT4G09100 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G11370 RHA1A RING-H2 finger A1A 0.01 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G41450 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT5G43420 No alias RING/U-box superfamily protein 0.01 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
LOC_Os02g35347.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g35365.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os08g43670.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os08g44950.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os10g30310.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os10g39770.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os12g24490.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Mp4g04600.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo402335 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
Solyc04g074820.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e009017_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e015449_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e017509_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e041824_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 113 156
No external refs found!