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  5. Solyc06g063270.4.1

Solyc06g063270.4.1


Description : Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana (sp|q689d6|rpd1_arath : 488.0)


Gene families : OG0002397 (Archaeplastida) Phylogenetic Tree(s): OG0002397_tree ,
OG_05_0001647 (LandPlants) Phylogenetic Tree(s): OG_05_0001647_tree ,
OG_06_0008686 (SeedPlants) Phylogenetic Tree(s): OG_06_0008686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g063270.4.1
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00049810 evm_27.TU.AmTr_v1... Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G06440 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070403 NAD+ binding IEP Neighborhood
InterPro domains Description Start Stop
IPR021099 PORR_domain 50 385
No external refs found!