AMTR_s00026p00191500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00026.96

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0002651 (SeedPlants) Phylogenetic Tree(s): OG_06_0002651_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00026p00191500
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00057950 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT3G10815 No alias RING/U-box superfamily protein 0.04 Archaeplastida
GSVIVT01008897001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_38252 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g44240.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c2_5960V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo129201 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc02g065650.1.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 Archaeplastida
Solyc07g007160.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc09g074460.3.1 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc11g010860.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc12g008440.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005811 lipid droplet IEP Neighborhood
CC GO:0012511 monolayer-surrounded lipid storage body IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 46 90
No external refs found!