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  5. Solyc06g064600.1.1

Solyc06g064600.1.1


Description : Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana (sp|q9fxb9|ppr84_arath : 932.0)


Gene families : OG0008908 (Archaeplastida) Phylogenetic Tree(s): OG0008908_tree ,
OG_05_0010973 (LandPlants) Phylogenetic Tree(s): OG_05_0010973_tree ,
OG_06_0006275 (SeedPlants) Phylogenetic Tree(s): OG_06_0006275_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g064600.1.1
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g35030,... 0.03 Archaeplastida
Gb_06572 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Zm00001e001494_P001 No alias no hits & (original description: none) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 176 203
IPR002885 Pentatricopeptide_repeat 142 170
IPR002885 Pentatricopeptide_repeat 471 495
IPR002885 Pentatricopeptide_repeat 50 79
IPR002885 Pentatricopeptide_repeat 204 233
IPR002885 Pentatricopeptide_repeat 298 325
IPR002885 Pentatricopeptide_repeat 235 261
IPR002885 Pentatricopeptide_repeat 24 48
IPR002885 Pentatricopeptide_repeat 111 141
IPR002885 Pentatricopeptide_repeat 80 110
IPR002885 Pentatricopeptide_repeat 268 294
IPR032867 DYW_dom 569 694
IPR002885 Pentatricopeptide_repeat 395 442
No external refs found!