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  5. Solyc06g066340.4.1

Solyc06g066340.4.1


Description : G2-like GARP transcription factor


Gene families : OG0000027 (Archaeplastida) Phylogenetic Tree(s): OG0000027_tree ,
OG_05_0000101 (LandPlants) Phylogenetic Tree(s): OG_05_0000101_tree ,
OG_06_0000453 (SeedPlants) Phylogenetic Tree(s): OG_06_0000453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g066340.4.1
Cluster HCCA: Cluster_573

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00190540 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00024p00053860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
AMTR_s00025p00224230 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
AMTR_s00059p00206130 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00061p00095620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00119p00095480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AT4G04555 No alias No description available 0.02 Archaeplastida
AT4G04580 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
AT4G13640 UNE16 Homeodomain-like superfamily protein 0.03 Archaeplastida
AT5G18240 ATMYR1, MYR1 myb-related protein 1 0.01 Archaeplastida
GSVIVT01005342001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
GSVIVT01015900001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
GSVIVT01022645001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01029458001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Gb_05469 No alias G2-like GARP transcription factor 0.01 Archaeplastida
Gb_06137 No alias G2-like GARP transcription factor 0.02 Archaeplastida
LOC_Os02g46940.1 No alias G2-like GARP transcription factor 0.08 Archaeplastida
LOC_Os05g40960.1 No alias G2-like GARP transcription factor 0.05 Archaeplastida
LOC_Os08g06370.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
LOC_Os08g25799.1 No alias G2-like GARP transcription factor 0.1 Archaeplastida
LOC_Os09g12770.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os10g39550.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Pp3c14_26270V3.1 No alias myb-like HTH transcriptional regulator family protein 0.07 Archaeplastida
Smo405399 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
Solyc06g008200.3.1 No alias PHR1 transcription factor involved in proline synthesis... 0.03 Archaeplastida
Solyc11g022470.2.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Zm00001e007585_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e023282_P002 No alias G2-like GARP transcription factor 0.07 Archaeplastida
Zm00001e035893_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 213 264
No external refs found!