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  5. Solyc06g069480.3.1

Solyc06g069480.3.1


Description : DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana (sp|q9fnq1|dexhe_arath : 3347.0)


Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree ,
OG_05_0001451 (LandPlants) Phylogenetic Tree(s): OG_05_0001451_tree ,
OG_06_0001729 (SeedPlants) Phylogenetic Tree(s): OG_06_0001729_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g069480.3.1
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.08 Archaeplastida
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.07 Archaeplastida
Cpa|evm.model.tig00000865.27 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.01 Archaeplastida
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.08 Archaeplastida
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
Gb_27895 No alias RNA helicase (Brr2) 0.03 Archaeplastida
LOC_Os03g11470.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
MA_10429486g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
MA_81219g0020 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Archaeplastida
MA_81219g0030 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.03 Archaeplastida
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.09 Archaeplastida
Mp7g00250.1 No alias RNA helicase (Brr2) 0.03 Archaeplastida
Pp3c2_9850V3.1 No alias U5 small nuclear ribonucleoprotein helicase 0.05 Archaeplastida
Smo144158 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
Zm00001e038727_P001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1773 2084
IPR004179 Sec63-dom 942 1248
IPR001650 Helicase_C 1569 1655
IPR001650 Helicase_C 670 819
IPR011545 DEAD/DEAH_box_helicase_dom 444 617
IPR011545 DEAD/DEAH_box_helicase_dom 1292 1456
No external refs found!