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  5. Solyc06g071020.3.1

Solyc06g071020.3.1


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g071020.3.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.09 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.07 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.08 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.07 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.03 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.05 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.07 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.08 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.08 Archaeplastida
Gb_19802 No alias pectate lyase 0.04 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.07 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.03 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.04 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.03 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.03 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Solyc03g058910.3.1 No alias pectate lyase 0.07 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.09 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.05 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 24 76
IPR002022 Pec_lyase 187 352
No external refs found!