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  5. Solyc06g071620.3.1

Solyc06g071620.3.1


Description : RNA helicase (Brr2)


Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree ,
OG_05_0001451 (LandPlants) Phylogenetic Tree(s): OG_05_0001451_tree ,
OG_06_0001729 (SeedPlants) Phylogenetic Tree(s): OG_06_0001729_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g071620.3.1

Target Alias Description ECC score Gene Family Method Actions
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
Zm00001e038727_P001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1729 2001
IPR011545 DEAD/DEAH_box_helicase_dom 1257 1425
IPR001650 Helicase_C 640 786
IPR004179 Sec63-dom 910 1211
IPR011545 DEAD/DEAH_box_helicase_dom 411 586
No external refs found!