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  5. Solyc06g071680.4.1

Solyc06g071680.4.1


Description : class-I histone deacetylase


Gene families : OG0000845 (Archaeplastida) Phylogenetic Tree(s): OG0000845_tree ,
OG_05_0001102 (LandPlants) Phylogenetic Tree(s): OG_05_0001102_tree ,
OG_06_0001942 (SeedPlants) Phylogenetic Tree(s): OG_06_0001942_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g071680.4.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AT5G63110 HDA6, RTS1,... histone deacetylase 6 0.03 Archaeplastida
Cre09.g387393 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Cre16.g673150 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 41 332
No external refs found!