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  5. Solyc06g072310.3.1

Solyc06g072310.3.1


Description : transcription factor (HD-ZIP IV)


Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0004621 (SeedPlants) Phylogenetic Tree(s): OG_06_0004621_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g072310.3.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00265170 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00024p00094630 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
AMTR_s00048p00089530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AT1G05230 HDG2 homeodomain GLABROUS 2 0.06 Archaeplastida
AT4G04890 PDF2 protodermal factor 2 0.11 Archaeplastida
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.08 Archaeplastida
GSVIVT01001986001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01001987001 No alias Homeobox-leucine zipper protein ROC7 OS=Oryza sativa... 0.03 Archaeplastida
GSVIVT01017073001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01029396001 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
GSVIVT01030605001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_05082 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
LOC_Os02g45250.1 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
LOC_Os04g53540.3 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
LOC_Os06g10600.1 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
LOC_Os08g04190.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
LOC_Os08g08820.2 No alias transcription factor (HD-ZIP IV) 0.14 Archaeplastida
LOC_Os09g35760.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
LOC_Os10g42490.1 No alias transcription factor (HD-ZIP IV) 0.09 Archaeplastida
MA_10318273g0010 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
MA_10374232g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_10426189g0030 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
MA_1086446g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_110607g0010 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
MA_122121g0010 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
MA_17048g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_8859629g0010 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
Smo403927 No alias No description available 0.02 Archaeplastida
Solyc02g080260.4.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Solyc12g005830.3.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Zm00001e002453_P001 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
Zm00001e017088_P001 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Zm00001e021649_P002 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Zm00001e023786_P003 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
Zm00001e036212_P002 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
Zm00001e039947_P001 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
Zm00001e040312_P001 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
Zm00001e042218_P002 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 228 453
IPR001356 Homeobox_dom 35 86
No external refs found!