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  5. Solyc06g073340.3.1

Solyc06g073340.3.1


Description : RBR-Ariadne-class E3 ubiquitin ligase


Gene families : OG0000511 (Archaeplastida) Phylogenetic Tree(s): OG0000511_tree ,
OG_05_0001468 (LandPlants) Phylogenetic Tree(s): OG_05_0001468_tree ,
OG_06_0001396 (SeedPlants) Phylogenetic Tree(s): OG_06_0001396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g073340.3.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT1G05890 ARI5, ATARI5 RING/U-box superfamily protein 0.04 Archaeplastida
GSVIVT01010742001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01031904001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
MA_88915g0010 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Archaeplastida
Pp3c23_14640V3.1 No alias IBR domain-containing protein 0.04 Archaeplastida
Pp3c24_15470V3.1 No alias IBR domain-containing protein 0.03 Archaeplastida
Pp3c4_29960V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Smo180454 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Zm00001e000911_P002 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.04 Archaeplastida
Zm00001e003726_P005 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Archaeplastida
Zm00001e011364_P001 No alias component MED25 of MEDIATOR transcription co-activator... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0043085 positive regulation of catalytic activity IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044093 positive regulation of molecular function IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 204 266
IPR002867 IBR_dom 283 331
No external refs found!