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  5. Solyc06g074140.1.1

Solyc06g074140.1.1


Description : E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana (sp|q9sf15|pub24_arath : 293.0)


Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0018799 (SeedPlants) Phylogenetic Tree(s): OG_06_0018799_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g074140.1.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00199950 evm_27.TU.AmTr_v1... U-box domain-containing protein 31 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00030p00130440 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
AMTR_s00030p00159240 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.06 Archaeplastida
AMTR_s00030p00161650 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00043p00215340 evm_27.TU.AmTr_v1... U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00069p00038840 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00138p00053700 evm_27.TU.AmTr_v1... U-box domain-containing protein 21 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT2G35930 PUB23 plant U-box 23 0.02 Archaeplastida
AT3G02840 No alias ARM repeat superfamily protein 0.06 Archaeplastida
AT3G11840 PUB24 plant U-box 24 0.05 Archaeplastida
AT3G52450 PUB22 plant U-box 22 0.05 Archaeplastida
AT5G37490 No alias ARM repeat superfamily protein 0.07 Archaeplastida
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.04 Archaeplastida
AT5G65920 No alias ARM repeat superfamily protein 0.02 Archaeplastida
GSVIVT01011139001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01011140001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01011616001 No alias U-box domain-containing protein 20 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01026542001 No alias U-box domain-containing protein 27 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_02628 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 Archaeplastida
Gb_02629 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.07 Archaeplastida
Gb_02635 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 Archaeplastida
Gb_11650 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.04 Archaeplastida
Gb_16227 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 Archaeplastida
Gb_16228 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
Gb_17119 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.06 Archaeplastida
Gb_19502 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.08 Archaeplastida
Gb_29851 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.09 Archaeplastida
Gb_29938 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os01g64570.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os02g33680.1 No alias U-box domain-containing protein 29 OS=Arabidopsis... 0.09 Archaeplastida
LOC_Os02g34410.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os02g46500.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.01 Archaeplastida
LOC_Os02g50460.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os03g13740.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os04g34030.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
LOC_Os04g34140.1 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
LOC_Os04g49970.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os04g58920.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os06g13870.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.06 Archaeplastida
LOC_Os10g03440.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.03 Archaeplastida
MA_10430196g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
MA_10432813g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.04 Archaeplastida
MA_10433846g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
MA_126399g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.04 Archaeplastida
MA_1663g0020 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.04 Archaeplastida
MA_17715g0010 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.04 Archaeplastida
MA_209202g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.02 Archaeplastida
MA_33190g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
MA_3784951g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_415344g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
MA_481299g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
MA_5536318g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_58844g0020 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
MA_61761g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
MA_6335g0010 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
MA_83739g0020 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.02 Archaeplastida
MA_8837995g0010 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.02 Archaeplastida
Mp2g06090.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Mp3g01700.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Mp3g22740.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Mp3g22750.1 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.02 Archaeplastida
Mp7g11000.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c10_20630V3.1 No alias plant U-box 22 0.02 Archaeplastida
Pp3c24_16470V3.1 No alias RING/U-box superfamily protein with ARM repeat domain 0.03 Archaeplastida
Smo104879 No alias U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo231257 No alias U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo414754 No alias U-box domain-containing protein 75 OS=Oryza sativa... 0.03 Archaeplastida
Smo416356 No alias U-box domain-containing protein 30 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g005160.4.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.05 Archaeplastida
Solyc01g007010.2.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.07 Archaeplastida
Solyc01g007020.4.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
Solyc01g007040.4.1 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.06 Archaeplastida
Solyc01g007050.3.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.1 Archaeplastida
Solyc01g080920.3.1 No alias No annotation 0.05 Archaeplastida
Solyc01g107980.3.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e000999_P001 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e006484_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e007108_P001 No alias No annotation 0.04 Archaeplastida
Zm00001e007109_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e008167_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014752_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e014766_P001 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Zm00001e015491_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e015763_P001 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e019173_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e022698_P001 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e036030_P001 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.09 Archaeplastida
Zm00001e039417_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e040854_P001 No alias U-box domain-containing protein 29 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006098 pentose-phosphate shunt IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006739 NADP metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
BP GO:0015693 magnesium ion transport IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051156 glucose 6-phosphate metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003613 Ubox_domain 6 78
No external refs found!