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  5. Solyc06g076210.3.1

Solyc06g076210.3.1


Description : IDN/IDP regulatory protein of DNA methylation pathway


Gene families : OG0000867 (Archaeplastida) Phylogenetic Tree(s): OG0000867_tree ,
OG_05_0000555 (LandPlants) Phylogenetic Tree(s): OG_05_0000555_tree ,
OG_06_0014593 (SeedPlants) Phylogenetic Tree(s): OG_06_0014593_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g076210.3.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00226630 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.01 Archaeplastida
AMTR_s00012p00230440 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
AT3G12550 No alias XH/XS domain-containing protein 0.02 Archaeplastida
AT3G48670 RDM12, IDN2 XH/XS domain-containing protein 0.06 Archaeplastida
GSVIVT01016527001 No alias Factor of DNA methylation 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01016528001 No alias Chromatin organisation.DNA methylation.canonical... 0.01 Archaeplastida
MA_16249g0010 No alias Factor of DNA methylation 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_166638g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9285293g0010 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.03 Archaeplastida
Pp3c21_20310V3.1 No alias XH/XS domain-containing protein 0.01 Archaeplastida
Pp3c21_20330V3.1 No alias XH/XS domain-containing protein 0.02 Archaeplastida
Pp3c21_20520V3.1 No alias XH/XS domain-containing protein 0.01 Archaeplastida
Solyc05g054420.4.1 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0031047 gene silencing by RNA IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005381 Znf-XS_domain 43 83
IPR005379 Uncharacterised_XH 557 687
IPR005380 XS_domain 200 310
No external refs found!