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  5. Solyc06g082210.1.1

Solyc06g082210.1.1


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana (sp|q9lmk2|lsh6_arath : 226.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g082210.1.1
Cluster HCCA: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
AT1G78815 LSH7 Protein of unknown function (DUF640) 0.05 Archaeplastida
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.03 Archaeplastida
LOC_Os02g07030.1 No alias Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os02g41460.1 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os02g56610.1 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
Solyc12g014260.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 Archaeplastida
Zm00001e027222_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.03 Archaeplastida
Zm00001e028824_P001 No alias Protein G1-like8 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
Zm00001e031512_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0071985 multivesicular body sorting pathway IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 43 159
No external refs found!