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  5. Solyc06g082220.4.1

Solyc06g082220.4.1


Description : Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana (sp|q94kd0|ta15b_arath : 147.0)


Gene families : OG0005595 (Archaeplastida) Phylogenetic Tree(s): OG0005595_tree ,
OG_05_0004944 (LandPlants) Phylogenetic Tree(s): OG_05_0004944_tree ,
OG_06_0007789 (SeedPlants) Phylogenetic Tree(s): OG_06_0007789_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g082220.4.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00073330 evm_27.TU.AmTr_v1... Transcription initiation factor TFIID subunit 15b... 0.08 Archaeplastida
AT5G58470 TAF15b TBP-associated factor 15B 0.04 Archaeplastida
LOC_Os01g07070.2 No alias Transcription initiation factor TFIID subunit 15b... 0.04 Archaeplastida
MA_10427252g0010 No alias Transcription initiation factor TFIID subunit 15b... 0.02 Archaeplastida
Zm00001e016824_P001 No alias Transcription initiation factor TFIID subunit 15b... 0.07 Archaeplastida
Zm00001e025837_P001 No alias Transcription initiation factor TFIID subunit 15b... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 285 314
No external refs found!