Solyc06g082520.3.1

Description : transcription factor (LAV-VAL)

Gene families : OG0002264 (Archaeplastida) Phylogenetic Tree(s): OG0002264_tree ,
OG_05_0002646 (LandPlants) Phylogenetic Tree(s): OG_05_0002646_tree ,
OG_06_0002238 (SeedPlants) Phylogenetic Tree(s): OG_06_0002238_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g082520.3.1
Cluster	HCCA: Cluster_273

Target	Alias	Description	ECC score	Gene Family Method
MA_10434655g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_95218g0010	No alias	B3 domain-containing protein Os07g0679700 OS=Oryza...	0.03	Archaeplastida
Smo88108	No alias	RNA biosynthesis.transcriptional activation.B3...	0.01	Archaeplastida
Zm00001e010557_P001	No alias	transcription factor (LAV-VAL)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
MF	GO:0030151	molybdenum ion binding	IEP	Neighborhood
MF	GO:0030170	pyridoxal phosphate binding	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
MF	GO:0070001	aspartic-type peptidase activity	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
MF	GO:0070279	vitamin B6 binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	317	416
IPR011124	Znf_CW	546	588

External Links

No external refs found!