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  5. Solyc06g083860.2.1

Solyc06g083860.2.1


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana (sp|o82268|lsh3_arath : 221.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083860.2.1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.04 Archaeplastida
AT5G58500 LSH5 Protein of unknown function (DUF640) 0.02 Archaeplastida
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.02 Archaeplastida
Gb_15426 No alias Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_36840 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
Gb_39186 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
LOC_Os02g07030.1 No alias Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g56610.1 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
LOC_Os05g28040.1 No alias Protein G1-like9 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
MA_211369g0010 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 Archaeplastida
Mp2g00330.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.04 Archaeplastida
Solyc07g062470.4.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
Zm00001e004570_P001 No alias Protein G1-like4 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Zm00001e012687_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
Zm00001e013711_P001 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
Zm00001e015143_P001 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.06 Archaeplastida
Zm00001e016177_P002 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
Zm00001e023022_P001 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
Zm00001e031512_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.04 Archaeplastida
Zm00001e041238_P001 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 42 164
No external refs found!