Solyc06g083870.3.1

Description : component SMC1/TTN8 of cohesin regulator complex

Gene families : OG0005243 (Archaeplastida) Phylogenetic Tree(s): OG0005243_tree ,
OG_05_0006401 (LandPlants) Phylogenetic Tree(s): OG_05_0006401_tree ,
OG_06_0006812 (SeedPlants) Phylogenetic Tree(s): OG_06_0006812_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g083870.3.1
Cluster	HCCA: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00208430	evm_27.TU.AmTr_v1...	Cell cycle.mitosis and meiosis.sister chromatid...	0.06	Archaeplastida
AMTR_s00047p00208850	evm_27.TU.AmTr_v1...	Cell cycle.mitosis and meiosis.sister chromatid...	0.07	Archaeplastida
AT3G54670	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes (SMC) family protein	0.08	Archaeplastida
Cre15.g635800	No alias	Structural maintenance of chromosomes protein 1...	0.02	Archaeplastida
GSVIVT01028343001	No alias	Cell cycle.mitosis and meiosis.sister chromatid...	0.04	Archaeplastida
LOC_Os12g44390.1	No alias	component SMC1/TTN8 of cohesin regulator complex	0.06	Archaeplastida
MA_10429667g0010	No alias	Structural maintenance of chromosomes protein 1...	0.05	Archaeplastida
MA_10437171g0020	No alias	no hits & (original description: none)	0.01	Archaeplastida
MA_15758g0010	No alias	Structural maintenance of chromosomes protein 1...	0.02	Archaeplastida
Mp1g29090.1	No alias	component SMC1/TTN8 of cohesin regulator complex	0.02	Archaeplastida
Pp3c12_10030V3.1	No alias	Structural maintenance of chromosomes (SMC) family protein	0.05	Archaeplastida
Smo236008	No alias	Structural maintenance of chromosomes protein 1...	0.02	Archaeplastida
Zm00001e003843_P001	No alias	component SMC1/TTN8 of cohesin regulator complex	0.15	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006338	chromatin remodeling	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016556	mRNA modification	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
MF	GO:0031491	nucleosome binding	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Neighborhood
BP	GO:0080009	mRNA methylation	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010935	SMC_hinge	517	632
IPR003395	RecF/RecN/SMC_N	10	1199

External Links

No external refs found!

Solyc06g083870.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation