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  5. Solyc06g084230.3.1

Solyc06g084230.3.1


Description : component RPS24 of SSU proteome


Gene families : OG0002123 (Archaeplastida) Phylogenetic Tree(s): OG0002123_tree ,
OG_05_0001922 (LandPlants) Phylogenetic Tree(s): OG_05_0001922_tree ,
OG_06_0002453 (SeedPlants) Phylogenetic Tree(s): OG_06_0002453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g084230.3.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00193110 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
AMTR_s00056p00221450 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AT3G04920 No alias Ribosomal protein S24e family protein 0.24 Archaeplastida
AT5G28060 No alias Ribosomal protein S24e family protein 0.23 Archaeplastida
Cpa|evm.model.tig00000361.64 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
Cre10.g456200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
GSVIVT01001167001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
GSVIVT01021860001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 Archaeplastida
Gb_38272 No alias component RPS24 of SSU proteome 0.18 Archaeplastida
LOC_Os01g52490.1 No alias component RPS24 of SSU proteome 0.21 Archaeplastida
LOC_Os02g13530.1 No alias component RPS24 of SSU proteome 0.26 Archaeplastida
LOC_Os06g36160.1 No alias component RPS24 of SSU proteome 0.22 Archaeplastida
MA_119841g0010 No alias component RPS24 of SSU proteome 0.17 Archaeplastida
Mp1g10680.1 No alias component RPS24 of SSU proteome 0.25 Archaeplastida
Pp3c12_10760V3.1 No alias Ribosomal protein S24e family protein 0.12 Archaeplastida
Pp3c12_10870V3.1 No alias Ribosomal protein S24e family protein 0.07 Archaeplastida
Pp3c13_22220V3.1 No alias Ribosomal protein S24e family protein 0.12 Archaeplastida
Pp3c3_19700V3.1 No alias Ribosomal protein S24e family protein 0.09 Archaeplastida
Pp3c4_16900V3.1 No alias Ribosomal protein S24e family protein 0.04 Archaeplastida
Pp3c4_16903V3.1 No alias Ribosomal protein S24e family protein 0.03 Archaeplastida
Smo227903 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
Smo271584 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
Zm00001e014422_P002 No alias component RPS24 of SSU proteome 0.23 Archaeplastida
Zm00001e019937_P001 No alias component RPS24 of SSU proteome 0.18 Archaeplastida
Zm00001e028203_P001 No alias component RPS24 of SSU proteome 0.23 Archaeplastida
Zm00001e030668_P001 No alias component RPS24 of SSU proteome 0.16 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001976 Ribosomal_S24e 26 103
No external refs found!