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  5. Solyc06g084430.4.1

Solyc06g084430.4.1


Description : histone (H2A)


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0109476 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0087341 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g084430.4.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.11 Archaeplastida
AMTR_s00168p00048800 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.4 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.07 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.08 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.06 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.11 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.06 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.06 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.21 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.2 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.18 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.24 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.24 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.22 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.29 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.25 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.21 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.21 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.21 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.29 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01002746001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01011029001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.11 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.14 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.12 Archaeplastida
Gb_06384 No alias histone (H2A) 0.22 Archaeplastida
Gb_07070 No alias histone (H2A) 0.16 Archaeplastida
Gb_12570 No alias histone (H2A) 0.05 Archaeplastida
Gb_25326 No alias histone (H2A) 0.13 Archaeplastida
Gb_29778 No alias histone (H2A) 0.04 Archaeplastida
Gb_34906 No alias histone (H2A) 0.03 Archaeplastida
Gb_37579 No alias histone (H2A) 0.08 Archaeplastida
Gb_39944 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.06 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.19 Archaeplastida
LOC_Os05g38640.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.09 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.13 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.17 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.08 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.07 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.17 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.13 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.13 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.14 Archaeplastida
MA_7320190g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_74667g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.1 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.04 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.05 Archaeplastida
Mp3g02370.1 No alias histone (H2A) 0.02 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.1 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.06 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.1 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.09 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.1 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.11 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.11 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.12 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.09 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 54 87
No external refs found!