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  5. Solyc07g005460.4.1

Solyc07g005460.4.1


Description : RNA polymerase-II phosphatase. subcluster H/CPL3-4 phosphatase


Gene families : OG0000720 (Archaeplastida) Phylogenetic Tree(s): OG0000720_tree ,
OG_05_0003700 (LandPlants) Phylogenetic Tree(s): OG_05_0003700_tree ,
OG_06_0004180 (SeedPlants) Phylogenetic Tree(s): OG_06_0004180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g005460.4.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020250001 No alias No description available 0.03 Archaeplastida
Pp3c8_3780V3.1 No alias C-terminal domain phosphatase-like 4 0.02 Archaeplastida
Pp3c9_21430V3.1 No alias C-terminal domain phosphatase-like 4 0.03 Archaeplastida
Smo167775 No alias Protein modification.dephosphorylation.aspartate-based... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
InterPro domains Description Start Stop
IPR004274 FCP1_dom 168 315
IPR001357 BRCT_dom 382 455
No external refs found!