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  5. Solyc07g005890.3.1

Solyc07g005890.3.1


Description : DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana (sp|q7fgz2|rh1_arath : 658.0)


Gene families : OG0002483 (Archaeplastida) Phylogenetic Tree(s): OG0002483_tree ,
OG_05_0002637 (LandPlants) Phylogenetic Tree(s): OG_05_0002637_tree ,
OG_06_0006921 (SeedPlants) Phylogenetic Tree(s): OG_06_0006921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g005890.3.1
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001027.29 No alias DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Pp3c6_13920V3.1 No alias RNA helicase 1 0.02 Archaeplastida
Zm00001e016118_P001 No alias DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0035596 methylthiotransferase activity IEP Neighborhood
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 58 288
IPR001650 Helicase_C 324 435
No external refs found!