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  5. Solyc07g008540.3.1

Solyc07g008540.3.1


Description : transcription factor (BBX-CO)


Gene families : OG0000884 (Archaeplastida) Phylogenetic Tree(s): OG0000884_tree ,
OG_05_0000594 (LandPlants) Phylogenetic Tree(s): OG_05_0000594_tree ,
OG_06_0000583 (SeedPlants) Phylogenetic Tree(s): OG_06_0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g008540.3.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
AT1G25440 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
AT1G73870 No alias B-box type zinc finger protein with CCT domain 0.03 Archaeplastida
GSVIVT01010855001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.11 Archaeplastida
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
Gb_02486 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
LOC_Os02g49880.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
LOC_Os03g50310.1 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
LOC_Os06g15330.1 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
MA_10428386g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c14_8140V3.1 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
Pp3c22_5440V3.1 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
Pp3c4_7080V3.1 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
Zm00001e005433_P002 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Zm00001e012194_P001 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Zm00001e015732_P002 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Zm00001e030952_P002 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
Zm00001e036760_P001 No alias transcription factor (BBX-CO) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR010402 CCT_domain 381 423
No external refs found!