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  5. Solyc07g009477.1.1

Solyc07g009477.1.1


Description : Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana (sp|q9zt94|polr2_arath : 124.0)


Gene families : OG0000940 (Archaeplastida) Phylogenetic Tree(s): OG0000940_tree ,
OG_05_0000578 (LandPlants) Phylogenetic Tree(s): OG_05_0000578_tree ,
OG_06_0000281 (SeedPlants) Phylogenetic Tree(s): OG_06_0000281_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g009477.1.1

Target Alias Description ECC score Gene Family Method Actions
Solyc01g067403.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.5 Archaeplastida
Solyc02g005604.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.05 Archaeplastida
Solyc02g050263.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc02g077865.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc02g082125.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g090397.1.1 No alias no hits & (original description: none) 0.2 Archaeplastida
Solyc04g017625.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc04g074865.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc05g025953.1.1 No alias No annotation 0.03 Archaeplastida
Solyc05g050887.1.1 No alias no hits & (original description: none) 0.25 Archaeplastida
Solyc05g051385.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc08g014612.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc08g083385.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Solyc10g051255.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.17 Archaeplastida
Solyc10g078275.1.1 No alias No annotation 0.01 Archaeplastida
Solyc11g039785.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 Archaeplastida
Solyc12g039205.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 Archaeplastida
Solyc12g077395.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!